Modified Commands

• Frequency map analysis now outputs tunes on range from [0, 1], instead of [0, 0.5]. Louis Emery assisted with this improvement and provided ideas for the algorithm.
• One can now use differential and multiplicative mode simultaneously for alter_elements.

• Added minimumn and maximumn columns to the sigma output file from run_setup, where n is 1 to 6. These columns give the minimum and maximum amplitude of the corresponding phase-space coordinate. Fixed problem with units for sij output. Fixed a bug that resulted in wrong sigma values in the output file for single-particle beam.

• The transmute_elements command can now transmute an element that has the LENGTH parameter into an element that doesn't have LENGTH, as long as the length is zero.