To run clinchor one needs are least two input files. One containing the namelist commands, and one for the HOMs definitions. The input file containing the namelist commands is specified on the shell command line as in this example,
where input.cb is the input file. The complete list of namelist commands and variables is given in section 3.
Macros (tag-value pairs) can be defined on the command line for substituting strings that appear in the input file between “<” and “>” characters. For example,
where tags <totalCurrent> and <dipoleHOMs> might appear in the input file.